Publications

Highlight

Individual variations in glycemic responses to carbohydrates and underlying metabolic physiology

CGM + meals

Yue Wu, Ben Ehlert, Ahmed A Metwally, Dalia Perelman, Heyjun Park, Andrew Wallace Brooks, Fahim Abbasi, Basil Michael, Alessandra Celli, Caroline Bejikian, Ekrem Ayhan, Yingzhou Lu, Samuel M Lancaster, Daniel Hornburg, Lucia Ramirez, David Bogumil, Sarah Pollock, Frank Wong, Denver Bradley, Georg Gutjahr, Ekanath Srihari Rangan, Tao Wang, Lettie McGuire, P Venkat Rangan, Helge Ræder, Zohar Shipony, Doron Lipson, Tracey McLaughlin, Michael P Snyder

Nature Medicine. (2025) · code

Reported by News Medical Life Science, Genetic Engineering & Biotechnology News, Stanford Medicine News, Bioengineer.org, American Council on Science and Health, and Labmate

Full publication list

See the full list of publications at Google Scholar

INSIGHT: Ingest and Standardize Glucose Harmonization Tool

Ehlert B, Shah K, Katarya D, Wu Y, Wang T, Snyder MP

J Diabetes Sci Technol. (2026) paper

A comparison of deep multiomics profiles across ethnicity, geography, and age

Barapour N; Cao JZ; Wu Y; Gupta S; Hoopmann MR; Qin R; Midha MK; Mireault M; Juanes-Velasco P; Hanson C et al.

Cell. (2026) paper

Modifiable Factors Affecting the Postprandial Glycemic Response

Wu, Y., McLaughlin, T., Gorgani, S., Scheideman, A. F., Shao, M. M., Hislop, B. D., Hoang, K., Perelman, D., McGinity, C., Rodgar, M., Park, H., Wang, T., Mayer, C., DuNova, A., Ayers, A., Ho, C., Ræder, H., Klonoff, D. C., Snyder, M. P.

Journal of diabetes science and technology. (2026) paper

Use of Continuous Glucose Monitoring with Machine Learning to Identify Metabolic Subphenotypes and Inform Precision Lifestyle Changes.

Metwally AA, Park H, Wu Y, McLaughlin T, Snyder MP

Journal of diabetes science and technology. (2025) paper

Origin of the clock in Neurospora crassa

Al-Omari, A., Altimus, C., Arnold, J., Arsenault, S., Bhandarkar, S., Bhusal, S., Caranica, C., Cheong, J. H., Deng, Z., Edison, A. S., Floyd, G., Griffith, J., Hull, B., Judge, M. T., Liu, Y., Mao, L., Mohanty, B., Qiu, X., Schüttler, H. B., Scruse, A., Taha, T., Wu, L., Wu, Y.

Frontiers in molecular biosciences. (2025) paper

Glucose360: An Open-Source Python Platform with Event-Based Integration for Continuous Glucose Monitoring Data Analysis

B Ehlert, D Aron, D Perelman, Y Wu, MP Snyder

Diabetes Technology & Therapeutics. (2025) paper · code

Prediction of metabolic subphenotypes of type 2 diabetes via continuous glucose monitoring and machine learning

Ahmed A Metwally, Dalia Perelman, Heyjun Park, Yue Wu, Alokkumar Jha, Seth Sharp, Alessandra Celli, Ekrem Ayhan, Fahim Abbasi, Anna L Gloyn, Tracey McLaughlin, Michael P Snyder

nature biomedical engineering. (2025) paper · code

High-resolution lifestyle profiling and metabolic subphenotypes of type 2 diabetes

Heyjun Park, Ahmed A Metwally, Alireza Delfarah, Yue Wu, Dalia Perelman, Caleb Mayer, Curtis McGinity, Majid Rodgar, Alessandra Celli, Tracey McLaughlin, Emmanuel Mignot, Michael Snyder

npj Digital Medicine. (2025) paper · code

Reported by News Medical Life Science and World Today News

Individual variations in glycemic responses to carbohydrates and underlying metabolic physiology

Nature Medicine. (2025) paper · code

Reported by News Medical Life Science, Genetic Engineering & Biotechnology News, Stanford Medicine News, Bioengineer.org, American Council on Science and Health, and Labmate

10.

MINE: a new way to design genetics experiments for discovery

Isaac Torres, Shufan Zhang, Amanda Bouffier, Michael Skaro, Yue Wu, Lauren Stupp, Jonathan Arnold, Y Anny Chung, H-Bernd Schuttler

Briefings in bioinformatics. (2025) paper

11.

Computer vision models enable mixed linear modeling to predict arbuscular mycorrhizal fungal colonization using fungal morphology

Shufan Zhang, Yue Wu, Michael Skaro, Jia-Hwei Cheong, Amanda Bouffier-Landrum, Isaac Torrres, Yinping Guo, Lauren Stupp, Brooke Lincoln, Anna Prestel, Camryn Felt, Sedona Spann, Abhyuday Mandal, Nancy Johnson, Jonathan Arnold

Scientific Reports. (2024) paper · code

12.

SAND: automated time-domain modeling of NMR spectra applied to metabolite quantification

Yue Wu, Omid Sanati, Mario Uchimiya, Krish Krishnamurthy, Jonathan Wedell, Jeffrey C Hoch, Arthur S Edison, Frank Delaglio

Analytical Chemistry. (2024) paper · code

13.

Uncovering in vivo biochemical patterns from time-series metabolic dynamics

Yue Wu, Michael T Judge, Arthur S Edison, and Jonathan Arnold

PloS one. (2022) paper · code

14.

Characterizing the gene–environment interaction underlying natural morphological variation in Neurospora crassa conidiophores using high- throughput phenomics and transcriptomics

Emily K Krach, Michael Skaro, Yue Wu, Jonathan Arnold

G3. (2022) paper

15.

Wild Isolates of Neurospora crassa Reveal Three Conidiophore Architectural Phenotypes

Krach, E.K.; Wu, Y.; Skaro, M.; Mao, L.; Arnold, J.

Microorganisms. (2020) paper · code

16.

RTExtract: time-series NMR spectra quantification based on 3D surface ridge tracking

Yue Wu, Michael T Judge, Jonathan Arnold, Suchendra M Bhandarkar, Arthur S Edison

Bioinformatics. (2020) paper · code

17.

Continuous in vivo Metabolism by NMR

Judge Michael T., Wu Yue, Tayyari Fariba, Hattori Ayuna, Glushka John, Ito Takahiro, Arnold Jonathan, Edison Arthur S

Frontiers in Molecular Biosciences. 6, 26 (2019) paper · code

18.

Genome-Wide Analysis Reveals Ancestral Lack of Seventeen Different tRNAs and Clade-Specific Loss of tRNA-CNNs in Archaea

Wu Yue, Wu Ping, Wang Bin, Shao Zhu-Qing

Frontiers in Microbiology. 9, 1245. (2018) paper

19.

Transcription regulation by DNA methylation under stressful conditions in human cancer

Sha Cao, Yi Zhou, Yue Wu, Tianci Song, Burair Alsaihati, and Ying Xu

Quantitative Biology. 5, 328-337. (2017) paper

20.

Systematic analyses of glutamine and glutamate metabolisms across different cancer types

Yuan Tian, Wei Du, Sha Cao, Yue Wu, Ning Dong, Yan Wang, and Ying Xu

Chinese Journal of Cancer. 36, 88. (2017) paper

21.

Identification of Arbuscular Mycorrhiza (AM)-Responsive microRNAs in Tomato

Ping Wu, Yue Wu, Cheng-Chen Liu, Li-Wei Liu, Fang-Fang Ma, Xiao-Yi Wu, Mian Wu, Yue-Yu Hang, Jian-Qun Chen, Zhu-Qing Shao, and Bin Wang

Front. Plant Sci 7, 429. (2016) paper · code

22.

Large-scale analyses of angiosperm nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes reveal three anciently diverged classes with distinct evolutionary patterns

Ping Wu, Yue Wu, Cheng-Chen Liu, Li-Wei Liu, Fang-Fang Ma, Xiao-Yi Wu, Mian Wu, Yue-Yu Hang, Jian-Qun Chen, Zhu-Qing Shao, and Bin Wang

Physiology 170, 2095-2109. (2016) paper